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ELISA sample preparation for serum, plasma, supernatant and tissue

Most failed ELISAs fail before the plate is opened. This guide covers collection, centrifugation, storage and dilution for each common sample type, and the checks that prove your matrix is not skewing the result.

Range: ELISA kits4 minute readUpdated

Rack of blood collection tubes with coloured caps
On this page
  1. Key points
  2. Why sample preparation decides the result
  3. Serum
  4. Plasma
  5. Cell culture supernatant
  6. Cell lysates and tissue homogenates
  7. Urine, saliva and cerebrospinal fluid
  8. Storage and freeze-thaw
  9. Dilution, spike recovery and linearity
  10. Questions

Key points

  • Use the sample types the kit manual lists as validated; a different matrix needs its own spike-recovery check.
  • Serum and plasma: separate within about 30 minutes to 2 hours, aliquot, and freeze at -80 °C for long storage.
  • Lysates and homogenates: work on ice with protease inhibitors, clarify by centrifugation and normalise to total protein.
  • Run a pilot dilution series so samples land in the middle of the standard curve, and avoid repeated freeze-thaw.

Why sample preparation decides the result

An ELISA measures what reaches the well. Proteins that degrade during collection, anticoagulants that interfere with binding, cell debris that adds background and matrix components that mask the target all change the number you report. The kit is validated for specific sample types under specific handling, so match both as closely as you can.

Serum

  1. Collect blood in a plain or serum-separator tube.
  2. Let it clot at room temperature, typically 30 minutes to 2 hours.
  3. Centrifuge at about 1,000–2,000 × g for 10–20 minutes.
  4. Transfer the serum without disturbing the clot, and aliquot.
  5. Assay the same day, or freeze at -20 °C short term and -80 °C long term.

Haemolysed samples, which look pink or red, release haemoglobin and intracellular proteins that can raise background or interfere with the reaction. Note them and exclude them if the manual says so.

Plasma

Collect blood into EDTA, heparin or citrate tubes and centrifuge within about 30 minutes at roughly 1,000 Ă— g for 15 minutes. Then aliquot and store as for serum.

The anticoagulant matters. EDTA chelates metal ions; heparin can interfere with some antibody binding and with downstream PCR if you use the same sample; citrate dilutes the sample slightly. Use the anticoagulant listed in the kit manual, and keep it the same across a study.

Cell culture supernatant

Centrifuge the medium to remove cells and debris, typically 1,000–1,500 × g for 10 minutes, then aliquot and freeze if you are not assaying straight away.

Cell lysates and tissue homogenates

  1. Rinse tissue in ice-cold PBS to remove blood, then weigh it.
  2. Homogenise on ice in PBS or a mild lysis buffer with protease inhibitors, at a fixed ratio such as 1 g of tissue per 5–10 mL of buffer.
  3. For cells, lyse with the buffer the kit recommends, or freeze-thaw two or three times.
  4. Centrifuge at about 10,000 × g for 10 minutes at 4 °C and keep the clear supernatant.
  5. Measure total protein so you can report the target per mg of protein.

Strong ionic detergents such as SDS can denature the antibodies on the plate. The lysis buffer guide lists gentler options that keep proteins in their native form.

Urine, saliva and cerebrospinal fluid

Centrifuge to remove cells and particles, then dilute as the manual directs. These fluids often contain the target at low levels, so check that your expected concentration is above the kit’s lowest detectable dose. For saliva, avoid food, drink and tooth brushing for 30 minutes before collection.

Storage and freeze-thaw

Typical ELISA sample storage (check your kit manual)
StorageTypical limitNotes
2–8 °CUp to about 24 hoursAssay as soon as possible
-20 °CWeeks to a few monthsUse a non-frost-free freezer
-80 °CLong termBest for study samples
Freeze-thaw cyclesAvoid repeatsAliquot before the first freeze

Thaw samples on ice or at room temperature, mix gently and centrifuge briefly before pipetting to remove any precipitate.

Dilution, spike recovery and linearity

Run a pilot on a few representative samples at two or three dilutions before the full set. Choose the dilution that puts most samples near the middle of the standard curve.

Two checks show that your sample matrix is not distorting the result:

  • Spike recovery. Add a known amount of standard to a sample and measure it. Recovery between about 80% and 120% means the matrix is not masking the target.
  • Linearity of dilution. Dilute a high sample in series. Values corrected for dilution should agree within about 20%.

Questions we get asked

Serum or plasma: which is better for ELISA?

Neither is better in general. Use the one the kit is validated for and keep it consistent across the study. Some analytes differ between serum and plasma because clotting releases proteins from platelets, so do not mix the two in one dataset.

How many times can I freeze and thaw ELISA samples?

As few as possible. Many proteins lose immunoreactivity with each cycle. Aliquot samples before the first freeze so each aliquot is thawed only once.

Can I use cell culture medium with fetal bovine serum?

Usually yes, but run a medium-only blank. Bovine proteins in the serum can cross-react with some kits and give a background signal that you then need to subtract.

What dilution should I use for my samples?

Start with the manual's recommendation, then run a pilot at two or three dilutions on a few samples. Pick the dilution that puts most samples near the middle of the standard curve.

Sources

  1. Standard operating procedures for serum and plasma collection: early detection research network consensus statement standard operating procedure integration working group. Tuck MK et al. J Proteome Res. 2009;8:113-7.
  2. A Practical Guide to Immunoassay Method Validation. Andreasson U et al. Front Neurol. 2015;6:179.

For research use only. Protocols here are general outlines: follow your kit manual and your institution’s safety rules. See our editorial policy.

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